Michalak Lab Publications

Journal Papers (bold names denote Michalak lab authors, denotes open access papers)

Last Updated 7/31/14

  1. Shiga, Y.P. , A.M. Michalak, S.M. Gourdji, K.L. Mueller, V. Yadav (2014) "Detecting fossil fuel emissions patterns from subcontinental regions using North American in situ CO2 measurements", Geophysical Research Letters, 41, doi:10.1002/2014GL059684.
  2. Zscheischler, J., A.M. Michalak, C. Schwalm, M.D. Mahecha, D.N. Huntzinger, M. Reichstein, G. Berthier, P. Ciais, R.B. Cook, B. El-Masri, M. Huang, A. Ito, A. Jain, A. King, H. Lei, C. Lu, J. Mao, S. Peng, B. Poulter, D. Ricciuto, X. Shi, B. Tao, H. Tian, N. Viovy, W. Wang, Y. Wei, J. Yang, N. Zeng (2014) "Impact of large-scale climate extremes on biospheric carbon fluxes: An intercomparison based on MsTMIP data", Global Biogeochemical Cycles, 28, 585–600, doi:10.1002/2014GB004826.
  3. Miller S.M., A.M. Michalak, S.C. Wofsy (2014) “Reply to Hristov et al.: Linking methane emissions inventories with atmospheric observations”, Proceedings of the National Academy of Sciences, 111:14, E1321, doi: 10.1073/pnas.1401703111.
  4. Scavia, D., J.D. Allan, K.K. Arend, S. Bartell, D. Beletsky, N.S. Bosch, S.B. Brandt, R.D. Briland, I. Daloğlu, J.V. DePinto, D.M. Dolan, M.A. Evans, T.M. Farmer, D. Goto, H. Han, T.O. Höök, R. Knight, S.A. Ludsin, D. Mason, A.M. Michalak, R.P. Richards, J.J. Roberts, D.K. Rucinski, E. Rutherford, D.J. Schwab, T. Sesterhenn, H. Zhang, Y. Zhou (2014) "Assessing and addressing the re-eutrophication of Lake Erie: Central basin hypoxia", Journal of Great Lakes Research, 40(2), 226-246, 10.1016/j.jglr.2014.02.004.
  5. Miller, S.M., D.E.J. Worthy, A.M. Michalak, S.C. Wofsy, E.A. Kort, T.C. Havice, A.E. Andrews, E.J. Dlugokencky, J.O. Kaplan, P.J. Levi, H. Tian, B. Zhang (2014) "Observational constraints on the distribution, seasonality, and environmental predictors of North American boreal methane emissions", Global Biogeochemical Cycles, 28, doi:10.1002/2013GB004580.
  6. Miller, S.M., A.M. Michalak, P.J. Levi (2014) “Atmospheric inverse modeling with known physical bounds: an example from trace gas emissions”, Geoscientific Model Development, 7, 303–315, doi:10.5194/gmd-7-303-2014.
  7. Ray, J., V. Yadav, A.M. Michalak, B. van Bloemen Waanders, S.A. McKenna (2014) "A multiresolution spatial parameterization for the estimation of fossil-fuel carbon dioxide emissions via atmospheric inversions", Geosci. Model Dev. Discuss., 7, 1277-1315, doi:10.5194/gmdd-7-1277-2014.
  8. Zhou, Y., D. Scavia, A.M. Michalak (2014) "Nutrient loading and meteorological conditions explain interannual variability of hypoxia in Chesapeake Bay", Limnology & Oceanography, 59(2), 373-384, doi:10.4319/lo.2014.59.2.0373.
  9. Huntzinger, D.N., C. Schwalm, A.M. Michalak, K. Schaefer, A.W. King, Y. Wei, A. Jacobson, S. Liu, R.B. Cook, W.M. Post, G. Berthier, D. Hayes, M. Huang, A. Ito, H. Lei, C. Lu, J. Mao, C.H. Peng, S. Peng, B. Poulter, D. Riccuito, X. Shi, H. Tian, W. Wang, N. Zeng, F. Zhao, Q. Zhu (2013) "The North American Carbon Program Multi-Scale Synthesis and Terrestrial Model Intercomparison Project – Part 1: Overview and experimental design", Geoscientific Model Development, 6, 2121-2133, doi:10.5194/gmd-6-2121-2013.
  10. Montanari, A., G. Blöschl, X. Cai, D.S. Mackay, A.M. Michalak, H. Rajaram, G. Sander (2013) “Editorial: Toward 50 years of Water Resources Research”, Water Resources Research, 49, 7841-7842, doi:10.1002/2013WR014986.
  11. Chatterjee, A., A.M. Michalak (2013) “Technical Note: Comparison of ensemble Kalman filter and variational approaches for CO2 data assimilation”, Atmospheric Chemistry and Physics, 13, 11643-11660, doi:10.5194/acp-13-11643-2013.
  12. Miller S.M., S.C. Wofsy, A.M. Michalak, E.A. Kort, A.E. Andrews, S.C. Biraud, E.J. Dlugokencky, J. Eluszkiewicz, M.L. Fischer, G. Janssens-Maenhout, B.R. Miller, J.B. Miller, S.A. Montzka, T. Nehrkorn, C. Sweeney (2013) “Anthropogenic emissions of methane in the United States”, Proceedings of the National Academy of Sciences, 110:50, 20018–20022, doi:10.1073/pnas.1314392110.
  13. Chatterjee, A., R.J. Engelen, S.R. Kawa, C. Sweeney, A.M. Michalak (2013) "Background error covariance estimation for atmospheric CO2 data assimilation", Journal of Geophysical Research – Atmospheres, 118, 10140–10154, doi:10.1002/jgrd.50654.
  14. Obenour, D.R., D. Scavia, N.N. Rabalais, R.E. Turner, A.M. Michalak (2013) "Retrospective Analysis of Midsummer Hypoxic Area and Volume in the Northern Gulf of Mexico, 1985-2011", Environmental Science & Technology, 47 (17), 9808–9815, doi:10.1021/es400983g.
  15. Schwalm, C.R., D.N. Huntinzger, A.M. Michalak, J.B. Fisher, J.S. Kimball, B. Mueller, K. Zhang, Y. Zhang (2013) "Sensitivity of inferred climate model skill to evaluation decisions: a case study using CMIP5 evapotranspiration", Environmental Research Letters, 8, 024028, doi:10.1088/1748-9326/8/2/024028.
  16. Yadav, V., A.M. Michalak (2013) “Improving computational efficiency in large linear inverse problems: an example from carbon dioxide flux estimation”, Geoscientific Model Development, 6, 583-590, doi:10.5194/gmd-6-583-2013.
  17. Michalak, A.M., E.J. Anderson, D. Beletsky, S. Boland, N.S. Bosch, T.B. Bridgeman, J.D. Chaffin, K. Cho, R. Confesor, I. Daloğlu, J.V. DePinto, M.A. Evans, G.L. Fahnenstiel., L. He, J.C. Ho, L. Jenkins, T.H. Johengen, K.C. Kuo, E. LaPorte, X. Liu, M.R. McWilliams, M.R. Moore, D.J. Posselt, R.P. Richards, D. Scavia, A.L. Steiner, E. Verhamme, D.M. Wright, M.A. Zagorski (2013) “Record-setting algal bloom in Lake Erie caused by agricultural and meteorological trends consistent with expected future conditions”, Proceedings of the National Academy of Sciences, 110:16, 6448-6452, doi:10.1073/pnas.1216006110.
  18. Shiga, Y.P., A.M. Michalak, S.R. Kawa, R.J. Engelen (2013) “In-situ CO2 monitoring network evaluation and design: A criterion based on atmospheric CO2 variability”, Journal of Geophysical Research – Atmospheres, 118, 2007-2018, doi:10.1002/jgrd.50168.
  19. Yadav, V., K.L. Mueller, A.M. Michalak (2013) “A backward elimination discrete optimization algorithm for model selection in spatio-temporal regression models”, Environmental Modelling & Software, 42, 88-98, doi:10.1016/j.envsoft.2012.12.009.
  20. Michalak, A.M. (2013) “Atmospheric observations and inverse modeling approaches for identifying geographical sources and sinks of carbon”, in Land Use and the Carbon Cycle: Advances in Integrated Science, Management, and Policy, edited by D.G. Brown, D.T. Robinson, N.H. French, and B.C. Reed, Cambridge University Press, New York, NY, 144-177.
  21. Zhou, Y., D.R. Obenour, D. Scavia, T.H. Johengen, A.M. Michalak (2013) “Spatial and Temporal Trends in Lake Erie Hypoxia, 1987-2007”, Environmental Science & Technology, 47 (2), 899-905, doi:10.1021/es303401b.
  22. Chatterjee, A., A.M. Michalak, J.L. Anderson, K.L. Mueller, V. Yadav (2012) “Toward reliable ensemble Kalman filter estimates of CO2 fluxes”, Journal of Geophysical Research – Atmospheres, 117, D22306, doi:10.1029/2012JD018176.
  23. Obenour, D.R., A.M. Michalak, Y. Zhou, D. Scavia (2012) “Quantifying the impacts of stratification and nutrient loading on hypoxia in the Northern Gulf of Mexico”, Environmental Science and Technology, 46 (10), 5489-5496, doi:10.1021/es204481a.
  24. Huntzinger, D.N., W.M Post, Y. Wei, A.M. Michalak, T.O. West, A.R. Jacobson, I.T. Baker, J.M. Chen, K.J. Davis, D.J. Hayes, F.M. Hoffman, A.K. Jain, S. Liu, A.D. McGuire, R.P. Neilson, B. Poulter, H.Q. Tian, P. Thornton, E. Tomelleril, N. Viovy, J. Xiao, N. Zeng, M. Zhao, and R. Cook (2012) “North American Carbon Program (NACP) Regional Interim Synthesis: Terrestrial Biospheric Model Intercomparison”, Ecological Modelling, 232, 144-157, doi:10.1016/j.ecolmodel.2012.02.004.
  25. Hammerling, D.M., A.M. Michalak, C. O’Dell, S.R. Kawa (2012) “Global CO2 distributions over land from the Greenhouse Gases Observing Satellite (GOSAT)”, Geophysical Research Letters, 39, L08804, doi:10.1029/2012GL051203.
  26. Miller, S.M., E.A. Kort, A.I. Hirsch, E.J. Dlugokencky, A.E. Andrews, X. Xu, H. Tian, T. Nehrkorn, J. Eluszkiewicz, A.M. Michalak, S.C. Wofsy (2012) “Regional sources of nitrous oxide over the United States: Seasonal variation and spatial distribution”, Journal of Geophysical Research – Atmospheres, 117, D06310, doi:10.1029/2011JD016951.
  27. Hammerling, D.M., A.M. Michalak, S.R. Kawa (2012) “Mapping of CO2 at high spatiotemporal resolution using satellite observations: Global distributions from OCO-2”, Journal of Geophysical Research – Atmospheres, 117, D06306, doi:10.1029/2011JD017015.
  28. Gourdji, S.M., K.L. Mueller, V. Yadav, D.N. Huntzinger, A.E. Andrews, M. Trudeau, G. Petron, T. Nehrkorn, J. Eluszkiewicz, J. Henderson, D. Wen, J. Lin, M. Fischer, C. Sweeney, A.M. Michalak (2012) “North American CO2 exchange: Inter-comparison of modeled estimates with results from a fine-scale atmospheric inversion”, Biogeosciences, 9, 1, 457-475, doi:10.5194/bg-9-457-2012.
  29. Vasys, V.N., A.R. Desai, G.A. McKinley, V. Bennington, A.M. Michalak, A.E. Andrews (2011) “The influence of carbon exchange of a large lake on regional tracer-transport inversions: results from Lake Superior”, Environmental Research Letters, 6, 3, 034016, doi:10.1088/1748-9326//6/3/034016
  30. Huntzinger, D.N., S.M. Gourdji, K.L. Mueller, A.M. Michalak (2011) “A systematic approach for comparing modeled biospheric carbon fluxes across regional scales”, Biogeosciences, 8, 6, 1579-1593, doi:10.5194/bg-8-1579-2011.
  31. Bruhwiler, L.M.P., A.M Michalak, and P.P. Tans (2011) “Spatial and temporal resolution of carbon flux estimates for 1983-2002”, Biogeosciences, 8, 1309-1331, doi:10.5194/bg-8-1309-2011.
  32. Erickson, T.A., A.M. Michalak, and J.C. Lin (2011) “A data system for visualizing 4-D atmospheric CO2 models and data”, OSGeo Journal, 8, 37-47.
  33. Huntzinger, D.N., S.M. Gourdji, K.L. Mueller, A.M. Michalak (2011) “The utility of continuous atmospheric measurements for identifying biospheric CO2 Flux Variability”, Journal of Geophysical Research - Atmospheres, 116, D06110, doi:10.1029/2010JD015048.
  34. Gockede, M., D.P. Turner, A.M. Michalak, D. Vickers, B.E. Law (2010) “Sensitivity of a sub-regional scale atmospheric inverse CO2 modeling framework to boundary conditions.” Journal of Geophysical Research – Atmospheres, 115, D24112, doi:10.1029/2010JG014443.
  35. Steiner, A.L., A.J. Davis, S. Sillman, R.C. Owen, A.M. Michalak, A.M. Fiore (2010) “Observed suppression of ozone formation at extremely high temperatures due to chemical and biophysical feedbacks.” Proceedings of the National Academy of Sciences, 107:46, 19685-19690, doi:10.1073/pnas.1008336107.
  36. Kort, E.A., A. Andrews, E. Dlugokencky, C. Sweeney, A. Hirsch, J. Eluszkiewicz, T. Nehrkorn, A. Michalak, B. Stephens, C. Gerbig, J. Miller, J. Kaplan, S. Houweling, B.C. Daube, P. Tans, S.C. Wofsy (2010) “Atmospheric constraints on 2004 emissions of methane and nitrous oxide in North America from atmospheric measurements and receptor-oriented modeling framework”, Journal of Integrative Environmental Sciences, Vol. 7, No. S1, 125–133, doi:10.1080/19438151003767483.
  37. Yadav, V., K.L. Mueller, D. Dragoni, A.M. Michalak (2010) “A geostatistical synthesis study of factors affecting gross primary productivity in various ecosystems of North America”, Biogeosciences, 7, 2655-2671, doi:10.5194/bg-7-2655-2010.
  38. Chatterjee, A., A.M. Michalak, S.R. Paradise, C.E. Miller, A.J. Braverman, R.S. Kahn (2010) “A geostatistical data fusion technique for merging remote sensing and ground-based observations of aerosol optical thickness”, Journal of Geophysical Research – Atmospheres, 115, D20207, doi:10.1029/2009JD013765.
  39. Mueller, K.L., V. Yadav, P.S. Curtis, C. Vogel, and A.M. Michalak (2010) “Attributing the variability of eddy-covariance CO2 flux measurements across temporal scales using geostatistical regression for a mixed northern hardwood forest”, Global Biogeochemical Cycles, 24, GB3023, doi:10.1029/2009GB003642.
  40. Gockede, M., A.M. Michalak, D. Vickers, D.P. Turner, and B.E. Law (2010) “Atmospheric inverse modeling to constrain regional-scale CO2 budgets at high spatial and temporal resolution”, Journal of Geophysical Research – Atmospheres, 115, D15113, doi:10.1029/ 2009JD012257.
  41. Gourdji, S.M., A.I. Hirsch, K.L. Mueller, V. Yadav, A.E. Andrews, and A.M. Michalak (2010) “Regional-scale geostatistical inverse modeling of North American CO2 fluxes: A synthetic data study”, Atmospheric Chemistry and Physics, 10, 6151–6167, 2010, doi:10.5194/acp-10-6151-2010.
  42. Zhou, Y., and A.M. Michalak (2009) “Characterizing attribute distributions in water sediments by geostatistical downscaling”, Environmental Science and Technology, 43 (24), 9267-9273, doi:10.1021/es901431y.
  43. Batterman, S.,  J. Eisenberg, R. Hardin, M.E. Kruk, M.C. Lemos, A.M. Michalak, B. Mukherjee, E. Renne, H. Stein, C. Watkins, and M.L. Wilson (2009), “Sustainable Control of Water-Related Infectious Diseases: A Review and Proposal for Interdisciplinary Health-Based Systems Research”, Environmental Health Perspectives, 117:7, doi:10.1289/ehp.0800423.
  44. Alkhaled, A.A., A.M. Michalak, S.R. Kawa (2008) “Using CO2 spatial variability to quantify representation errors of satellite CO2 retrievals”, Geophysical Research Letters, 35, L16813, doi:10.1029/2008GL034528.
  45. Mueller, K.L., S.M. Gourdji, and A.M. Michalak (2008), “Global monthly-averaged CO2 fluxes recovered using a geostatistical inverse modeling approach: 1. Results using atmospheric measurements” Journal of Geophysical Research – Atmospheres, 113, D21114,doi:10.1029/2007JD009734.
  46. Gourdji, S.M., K.L. Mueller, K. Schaefer, and A.M. Michalak (2008) “Global monthly-averaged CO2 fluxes recovered using a geostatistical inverse modeling approach: 2. Results including auxiliary environmental data”, Journal of Geophysical Research – Atmospheres, 113, D21115, doi:10.1029/2007JD009733.
  47. Alkhaled, A.A., A.M. Michalak, S. Olsen, S.R. Kawa, J.-W. Wang (2008, “A global evaluation of the regional spatial variability of column integrated CO2 distributions”, Journal of Geophysical Research – Atmospheres, 113, D20303, doi:10.1029/2007JD009693.
  48. Michalak, A.M. (2008) “A Gibbs sampler for inequality-constrained geostatistical interpolation and inverse modeling”, Water Resources Research, 44, W09437, doi:10.1029/2007WR006645.
  49. Michalak, A.M. (2008) “Adapting a fixed-lag Kalman smoother to a geostatistical atmospheric inversion framework”, Atmospheric Chemistry and Physics, 8, 6789–6799.
  50. Miller, C.E., D. Crisp, P.L. DeCola, S.C. Olsen, J.T. Randerson, A.M. Michalak, A. Alkhaled, P. Rayner, D.J. Jacob, P. Suntharalingam, D. Jones, A.S. Denning, M.E. Nicholls, S.C. Doney, S. Pawson, H. Boesch, B.J. Connor, I.Y. Fung, D. O’Brien, R.J. Salawitch. S.P. Sander, B. Sen, P. Tans, G.C. Toon, P.O. Wennberg, S.C. Wofsy, Y.L. Yung, R.M. Law (2007) “Precision requirements for space-based data”, Journal of Geophysical Research, 112, D10314, doi:10.1029/2006JD007659.
  51. Michalak, A.M., and S. Shlomi (2007) “A geostatistical data assimilation approach for estimating groundwater plume distributions from multiple monitoring events”, Invited paper, Subsurface Hydrology: Data Integration for Properties and Processes, American Geophysical Union (AGU) Geophysical Monograph Series 171, doi:10.1029/171GM08.
  52. Shlomi, S. and A.M. Michalak (2007) “A geostatistical framework for incorporating transport information in estimating the distribution of a groundwater contaminant plume”, Water Resources Research, 43, W03412, doi:10.1029/2006WR005121.
  53. Adriaens, P., M.-Y. Li, and A.M. Michalak (2006) “Scaling methods of sediment bioremediation processes and applications”, Engineering in Life Sciences, 6 (3), 217-227, doi:10.1002/elsc.200520127.
  54. Hirsch, A.I., A.M. Michalak, L.M. Bruhwiler, W. Peters, E.J. Dlugokencky, and P.P. Tans (2006) “Inverse modeling estimates of the global nitrous oxide surface flux from 1998-2001”, Global Biogeochemical Cycles, 20, GB1008, doi:10.1029/2004GB002443.
  55. Michalak, A.M., A. Hirsch, L. Bruhwiler, K.R. Gurney, W. Peters, and P.P. Tans (2005, “Maximum likelihood estimation of covariance parameters for Bayesian atmospheric trace gas surface flux inversions”, Journal of Geophysical Research, 110, D24107, doi:10.1029/ 2005JD005970.
  56. Bruhwiler, L.M.P., A.M. Michalak, W. Peters, D.F. Baker, and P. Tans (2005) “An improved Kalman smoother for atmospheric inversions”, Atmospheric Chemistry & Physics, 5, 2691-2702.
  57. Michalak, A.M., and P.K. Kitanidis (2005) “A method for the interpolation of nonnegative functions with an application to contaminant load estimation”, Stochastic Environmental Research and Risk Assessment,19, 8 - 23, doi:10.1007/s00477-004-0189-1.
  58. Michalak, A.M., L. Bruhwiler, and P.P. Tans (2004) “A geostatistical approach to surface flux estimation of atmospheric trace gases”, Journal of Geophysical Research, 109, D14109, doi:10.1029/2003JD004422.
  59. Michalak, A.M., and P.K. Kitanidis (2004) “Estimation of historical groundwater contaminant distribution using the adjoint state method applied to geostatistical inverse modeling”, Water Resources Research, 40, W08302, doi:10.29/2004WR003214.
  60. Michalak, A.M., and P.K. Kitanidis (2004) “Application of geostatistical inverse modeling to contaminant source identification at Dover AFB, Delaware”, IAHR Journal of Hydraulic Research, 42 (special issue), 9-18.
  61. Michalak, A.M., and P.K. Kitanidis (2003) “A method for enforcing parameter nonnegativity in Bayesian inverse problems with an application to contaminant source identification”, Water Resources Research, 39 (2), 1033, doi:10.1029/2002WR001480.
  62. Michalak, A.M. (2002) “Environmental contamination with multiple potential sources and the common law: Current approaches and emerging opportunities”, Fordham Environmental Law Journal, XIV (1), 147-206.
  63. Michalak, A.M., and P.K. Kitanidis (2000) “Macroscopic behavior and random walk particle tracking of kinetically sorbing solutes”, Water Resources Research, 36 (8), 2133-2146.